PRABI
Rhone-Alpes Bioinformatics Center


2011

2011

Blaise, B.J., Navratil, V., Emsley, L. and Toulhoat, P. (2011) Orthogonal filtered recoupled-STOCSY to extract metabolic networks associated with minor perturbations from NMR spectroscopy. J. Proteome Res., 10, 4342-4348. [PubMed]

Blavet, N., Charif, D., Oger-Desfeux, C., Marais, G.A. and Widmer, A. (2011) Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database. BMC Genomics, 12, 376. [PubMed]

Davidovic, L., Navratil, V., Bonaccorso, C.M., Catania, M.V., Bardoni, B. and Dumas, M.E. (2011) A metabolomic and systems biology perspective on the brain of the fragile X syndrome mouse model. Genome Res., 21, 2190-2202. [PubMed]

Grégoire, I.P., Richetta, C., Meyniel-Schicklin, L., Borel, S., Pradezynski, F., Diaz, O., Deloire, A., Azocar, O., Baguet, J., Le Breton, M., Mangeot, P.E., Navratil, V., Joubert, P.E., Flacher, M., Vidalain, P.O., André, P., Lotteau, V., Biard-Piechaczyk, M., Rabourdin-Combe, C. and Faure, M. (2011) IRGM is a common target of RNA viruses that subvert the autophagy network. PLoS Pathog., 7, e1002422. [PubMed]

Hommais, F., Zghidi-Abouzid, O., Oger-Desfeux, C., Pineau-Chapelle, E., Van Gijsegem, F., Nasser, W. and Reverchon, S. (2011) lpxC and yafS are the most suitable internal controls to normalize real time RT-qPCR expression in the phytopathogenic bacteria Dickeya dadantii. PLoS One, 6, e20269. [PubMed]

Jordheim, L.P., Plesa, A., Dreano, M., Cros-Perrial, E., Keime, C., Herveau, S., Demangel, D., Vendrell, J.A. and Dumontet, C. (2011) Sensitivity and gene expression profile of fresh human acute myeloid leukemia cells exposed ex vivo to AS602868. Cancer Chemother. Pharmacol., 68, 97-105. [PubMed]

Lassalle, F., Campillo, T., Vial, L., Baude, J., Costechareyre, D., Chapulliot, D., Shams, M., Abrouk, D., Lavire, C., Oger-Desfeux, C., Hommais, F., Gueguen, L., Daubin, V., Muller, D. and Nesme, X. (2011) Genomic species are ecological species as revealed by comparative genomics in Agrobacterium tumefaciens. Genome Biol. Evol., 3, 762–781. [PubMed]

Navratil, V., de Chassey, B., Combe, C.R. and Lotteau, V. (2011) When the human viral infectome and diseasome networks collide : towards a systems biology platform for the aetiology of human diseases. BMC Syst. Biol., 5, 13. [PubMed]

Palmeira, L., Penel, S., Lotteau, V., Rabourdin-Combe, C. and Gautier, C. (2011) PhEVER : a database for the global exploration of virus-host evolutionary relationships. Nucleic Acids Res., 39, D569-575. [PubMed]

Pontoizeau, C., Fearnside, J.F., Navratil, V., Domange, C., Cazier, J.B., Fernandez-Santamaria, C., Kaisaki, P.J., Emsley, L., Toulhoat, P., Bihoreau, M.T., Nicholson, J.K., Gauguier, D. and Dumas, M.E. (2011) Broad-ranging natural metabotype variation drives physiological plasticity in healthy control inbred rat strains. J. Proteome Res., 10, 1675-1689. [PubMed]